Qkbks 2010 diconnect bills, billpayments and checks, how to connect?

Using Qkbks POS and 2010 to track retail. First 5 months did not correctly utilize the bills-bill payment system. So now I have disconnected bills the Qkbks created and my payments by check. How do you either connect them or remove bills without effecting deposits? I'd rather keep the checks as we used Qkbks 2006 for first 6 months of 2011 and all those payments are in form of checks. Annual reports are littered with bills, bill payments and even a few sales receits. agnell